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  "Type": "Package",
  "Title": "Spatial Simulation and Scale-Dependent Analysis of Biodiversity\nChanges",
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  "Authors@R": "c(\nperson(\"Felix\", \"May\", email = \"felix.may@fu-berlin.de\",\nrole = c(\"aut\", \"cre\",\"cph\"),\ncomment = c(ORCID = \"0000-0002-1106-8188\")),\nperson(\"Alban\", \"Sagouis\", email = \"alban.sagouis@idiv.de\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-3827-1063\")),\nperson(\"German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig\",\nrole = \"fnd\", comment = c(ROR = \"01jty7g66\")),\nperson(\"Freie Universität Berlin\",\nrole = \"fnd\", comment = c(ROR = \"046ak2485\"))\n)",
  "Date": "2024-11-26",
  "Description": "Simulation, analysis and sampling of spatial biodiversity\ndata (May, Gerstner, McGlinn, Xiao & Chase 2017)\n<doi:10.1111/2041-210x.12986>. In the simulation tools user\ndefine the numbers of species and individuals, the species\nabundance distribution and species aggregation. Functions for\nanalysis include species rarefaction and accumulation curves,\nspecies-area relationships and the distance decay of\nsimilarity.",
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  "_topics": [
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    "macroecology",
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    "description": "The repositories related to an iDiv working group examining best practices in the measurement of biodiversity"
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    "community",
    "community_to_sad",
    "dist_decay",
    "dist_decay_quadrats",
    "div_rand_rect",
    "div_rect",
    "divar",
    "rare_curve",
    "rThomas_rcpp",
    "sample_quadrats",
    "sampling_grids",
    "sampling_one_quadrat",
    "sampling_random_bruteforce",
    "sampling_random_overlap",
    "sampling_random_spatstat",
    "sampling_transects",
    "sim_poisson_community",
    "sim_poisson_coords",
    "sim_sad",
    "sim_thomas_community",
    "sim_thomas_coords",
    "spec_sample",
    "spec_sample_curve"
  ],
  "_help": [
    {
      "page": "abund_rect",
      "title": "-------------------------- Get local species abundance distribution",
      "topics": [
        "abund_rect"
      ]
    },
    {
      "page": "community",
      "title": "Create spatial community object",
      "topics": [
        "community"
      ]
    },
    {
      "page": "community_to_sad",
      "title": "Get species abundance distribution from community object",
      "topics": [
        "community_to_sad"
      ]
    },
    {
      "page": "dist_decay",
      "title": "Distance decay of similarity",
      "topics": [
        "dist_decay"
      ]
    },
    {
      "page": "dist_decay_quadrats",
      "title": "Distance decay of similarity with user-defined quadrats",
      "topics": [
        "dist_decay_quadrats"
      ]
    },
    {
      "page": "div_rand_rect",
      "title": "Distribution of local diversity indices",
      "topics": [
        "div_rand_rect"
      ]
    },
    {
      "page": "div_rect",
      "title": "Get local diversity indices",
      "topics": [
        "div_rect"
      ]
    },
    {
      "page": "divar",
      "title": "Diversity-area relationships",
      "topics": [
        "divar"
      ]
    },
    {
      "page": "plot.community",
      "title": "Plot spatial community object",
      "topics": [
        "plot.community"
      ]
    },
    {
      "page": "plot.dist_decay",
      "title": "Plot distance decay of similarity",
      "topics": [
        "plot.dist_decay"
      ]
    },
    {
      "page": "plot.divar",
      "title": "-------------------------- Plot diversity-area relationships",
      "topics": [
        "plot.divar"
      ]
    },
    {
      "page": "plot.sad",
      "title": "Plot species abundance distributions",
      "topics": [
        "plot.sad"
      ]
    },
    {
      "page": "plot.spec_sample_curve",
      "title": "Plot species sampling curves",
      "topics": [
        "plot.spec_sample_curve"
      ]
    },
    {
      "page": "rare_curve",
      "title": "Species rarefaction curve",
      "topics": [
        "rare_curve"
      ]
    },
    {
      "page": "rThomas_rcpp",
      "title": "Thomas process individual distribution simulation for one species",
      "topics": [
        "rThomas_rcpp"
      ]
    },
    {
      "page": "sample_quadrats",
      "title": "Plot-based samples from a spatially-explicit census",
      "topics": [
        "sample_quadrats"
      ]
    },
    {
      "page": "sampling_grids",
      "title": "Creates square quadrats aligned on a regular grid",
      "topics": [
        "sampling_grids"
      ]
    },
    {
      "page": "sampling_one_quadrat",
      "title": "Creates one square quadrat randomly located in the landscape",
      "topics": [
        "sampling_one_quadrat"
      ]
    },
    {
      "page": "sampling_random_bruteforce",
      "title": "Creates coordinates (lower left corner of a quadrat) randomly distributed but without overlapping each other",
      "topics": [
        "sampling_random_bruteforce"
      ]
    },
    {
      "page": "sampling_random_overlap",
      "title": "Creates coordinates (lower left corner of a quadrat) randomly distributed that may overlap each other",
      "topics": [
        "sampling_random_overlap"
      ]
    },
    {
      "page": "sampling_random_spatstat",
      "title": "Creates coordinates (lower left corner of a quadrat) randomly distributed but without overlapping each other",
      "topics": [
        "sampling_random_spatstat"
      ]
    },
    {
      "page": "sampling_transects",
      "title": "Creates square quadrats aligned along a transect",
      "topics": [
        "sampling_transects"
      ]
    },
    {
      "page": "sim_poisson_community",
      "title": "Simulate community with random spatial positions.",
      "topics": [
        "sim_poisson_community"
      ]
    },
    {
      "page": "sim_poisson_coords",
      "title": "Simulate random spatial coordinates",
      "topics": [
        "sim_poisson_coords"
      ]
    },
    {
      "page": "sim_sad",
      "title": "Simulate species abundance distributions",
      "topics": [
        "sim_sad"
      ]
    },
    {
      "page": "sim_thomas_community",
      "title": "Simulate community with clumped spatial positions.",
      "topics": [
        "sim_thomas_community"
      ]
    },
    {
      "page": "sim_thomas_coords",
      "title": "Simulate clumped spatial coordinates",
      "topics": [
        "sim_thomas_coords"
      ]
    },
    {
      "page": "spec_sample",
      "title": "Sample species richness",
      "topics": [
        "spec_sample"
      ]
    },
    {
      "page": "spec_sample_curve",
      "title": "Non-spatial and spatially-explicit species sampling curves",
      "topics": [
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      ]
    },
    {
      "page": "summary.community",
      "title": "Print summary of spatial community object",
      "topics": [
        "summary.community"
      ]
    },
    {
      "page": "summary.sad",
      "title": "Print summary of species abundance distribution object",
      "topics": [
        "summary.sad"
      ]
    }
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        "Non-spatial patterns",
        "Species abundance distribution (SAD)",
        "Rarefaction curve",
        "Spatial patterns",
        "Species-accumulation curve",
        "Diversity-area relationships",
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        "Sampling spatially-explicit community data",
        "Analysis of plot-based community data",
        "Small scale analysis",
        "Large scale analysis",
        "Compare results across scales",
        "Conclusion"
      ],
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      "engine": "knitr::rmarkdown",
      "headings": [
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        "Transect sampling",
        "Grid sampling"
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      "title": "Simulating communities with mobsim",
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        "Simulating species abundance distributions",
        "Simulate spatial distributions",
        "Random distributions",
        "Aggregated positions",
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